rs30790602 SNP Detail

Summary

• ID
  rs30790602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46812072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT CCATGGGAAC TAATAACACA
  Y
  GACTCAGAAT AAGCTCTGTT AATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss39221728	mCV25349264	ABI	CRAMUS_MOUSE	f	SNP	C	C				T		C
ss49176212	NES12498668	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C	C	C	T		C	C		C
ss139387219	ENSMUSSNP6181256	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						C
ss324590203	CHEV_14_47194290	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30790602					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49176212	NES12498668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46812072 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491231	regulatory region 491231	1346 bp distal
Rr491232	regulatory region 491232	653 bp distal
Rr491233	regulatory region 491233	796 bp proximal
Rr491234	regulatory region 491234	1222 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	within coordinates
Tssr128285	transcription start site region 128285	1234 bp downstream