rs30790638 SNP Detail

Summary

• ID
  rs30790638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93730208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC ATAGTTTCAG GCCAGCCAGG
  R
  ATACATTGTG AGACCCAGGC TCAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44963793	mCV22923010	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss144960930	ENSMUSSNP6704093	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss319844188	CHEV_1_95699063	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30790638					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93730208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi608	CpG island 608	194 bp distal
Cpgi609	CpG island 609	949 bp proximal
Dtymk	deoxythymidylate kinase	552 bp upstream
Gm57164	predicted gene, 57164	677 bp downstream
Gm70929	predicted gene, 70929	within coordinates
Ing5	inhibitor of growth family, member 5	1479 bp upstream
Rr29859	regulatory region 29859	within coordinates
Rr366972	regulatory region 366972	344 bp downstream
Rr396180	regulatory region 396180	1210 bp upstream
Tssr8200	transcription start site region 8200	319 bp downstream
Tssr8201	transcription start site region 8201	1459 bp upstream
Tssr13052	transcription start site region 13052	541 bp upstream
Tssr13053	transcription start site region 13053	1284 bp downstream