rs30791232 SNP Detail

Summary

• ID
  rs30791232
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34686060 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGCT GCGTACCATG AATATTTATA
  K
  TACCTGGGAA CGTTGACATT CCTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46445574	mCV22857443	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss321075205	CHEV_4_34633309	CHEVERUD	SCREENING_POP	r	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30791232					SNP	T	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34686060 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14121	CpG island 14121	718 bp proximal
Gm56184	predicted gene, 56184	1875 bp downstream
Rr100808	regulatory region 100808	140 bp proximal
Rr398199	regulatory region 398199	1163 bp upstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	within coordinates
Tssr41193	transcription start site region 41193	1202 bp downstream
Tssr41194	transcription start site region 41194	1252 bp downstream
Tssr41195	transcription start site region 41195	1287 bp downstream
Tssr41196	transcription start site region 41196	1322 bp downstream
Tssr41197	transcription start site region 41197	1397 bp downstream