rs30791417 SNP Detail

Summary

• ID
  rs30791417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125997119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTCAATA AAACAAGTGT CACACCATAT
  CAAGGTTCAA CATTCTATCC TAAATAGAGA AGATGCCAAA GAAGTCCTGA CCATCATTAT
  TAGTCCTGAC CATACATTGC TGTAGAAGGA AGCATGTCTT ATCCTTTAAT GGTGTAGCAA
  Y
  TGGGAGACTA GTTATAAAAA AGAAAGCTCT CAGAAGGAAA GAAAAGGAAA AGGCAGTGGG
  ACATGAGGCG TGAACTACTA ATCAGCtgtg gtggattgaa tatgcttggc ccaaggagtg
  gcactattag gagttgtggc ctttttggaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49671544	NES13001100	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T	T		C
ss319959153	CHEV_1_127965959	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30791417					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49671544	NES13001100	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125997119 () rs orientation: forward

Symbol	Name	Function Class
Gm35562	predicted gene, 35562	within coordinates
Gm37936	predicted gene, 37936	758 bp downstream
Nckap5	NCK-associated protein 5	within coordinates