rs30791422 SNP Detail

Summary

• ID
  rs30791422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:125996145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAATGCAT TCGATAGACA ACTGCTTAAG
  CATAAATTCT CCATACTTAA Agtataacca ccaccaaggc aatatctata agtacagaca
  ctcacagatg tctgctgttg aaacacacat tgaatgccat tagaataact gatgggcttt
  Y
  ctgaaacaat ggggtattcc tactaaaatt aaaaatgaag caaagttcaa ctatttcctt
  gaAATCAGAG TACATACAGC TTGCATTGGA CTCATGGCAA AAATACCCAG AGTTTCTATA
  TAGAACGTGT CCAATTCTCT GTTTTAGTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45143620	mCV22278544	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss49671549	NES13001116	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	T	T		T	T	T	T		C
ss145423564	ENSMUSSNP5043504	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss319959148	CHEV_1_127964985	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30791422					SNP	C	C	C	C	C	C	T	C	C	T	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49671549	NES13001116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125996145 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35562	predicted gene, 35562			within coordinates
Gm37936	predicted gene, 37936			1732 bp downstream
Nckap5	NCK-associated protein 5			Intron
				Noncoding-Transcript-Variant