rs30791898 SNP Detail

Summary

• ID
  rs30791898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6096323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATGAACAC GCACGCCGAC TGAGCTTTTG GGGTGTTGAA
  AAGTCAACGC CTTCGCACAG AACTCTCCAC CCCAACCTAG AAATAACTGG CGTTCTGTTT
  Y
  ATGTCAGTCC GGACACGCAA GCACTGCTCC TTTTGCGGGC CCCGTAAGCA TCCCCCCAGG
  CGGGATAGGG ATCCCCGGCC TATGGACTGC GCTTTCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44963614	mCV24718642	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss50575702	NES13653301	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	T	C		C	C	C	C		C
ss146014870	ENSMUSSNP5033824	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss325717979	CHEV_19_6046293	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30791898					SNP	T	T	C	C	C	T	C	T	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575702	NES13653301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6096323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	within coordinates
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1471 bp upstream
Gm59262	predicted gene, 59262	within coordinates
Rr370438	regulatory region 370438	15 bp upstream
Rr405816	regulatory region 405816	1812 bp downstream
Rr405817	regulatory region 405817	269 bp downstream
Rr543275	regulatory region 543275	1853 bp distal
Rr543276	regulatory region 543276	1989 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	213 bp distal
Rr543279	regulatory region 543279	380 bp proximal
Rr543280	regulatory region 543280	719 bp proximal
Rr543281	regulatory region 543281	822 bp proximal
Rr543282	regulatory region 543282	1015 bp proximal
Rr543283	regulatory region 543283	1078 bp proximal
Rr543284	regulatory region 543284	1126 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	283 bp upstream
Tssr154538	transcription start site region 154538	180 bp downstream
Tssr154539	transcription start site region 154539	336 bp upstream
Tssr154540	transcription start site region 154540	728 bp upstream
Tssr154541	transcription start site region 154541	762 bp upstream
Tssr154542	transcription start site region 154542	788 bp upstream
Tssr157816	transcription start site region 157816	1392 bp upstream
Tssr157817	transcription start site region 157817	655 bp downstream
Tssr157818	transcription start site region 157818	1117 bp downstream