rs30792111 SNP Detail

Summary

• ID
  rs30792111
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144218553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTCCCCCAT ACCCACCCAA CCCCACTCCC CTACCCACCC ACTCTCCCGT TTTGGCCCTG
  GCGTTCCCCT GTACTGGGGC ATATAAAGTT TGTGTATCCA ATGGGCTTCT CTTTCCAATG
  ATGGCCGACT AGGCCATCTT TTGATACATA TGCAGCTAGA GTCAAGAGCT CCGGGGTACT
  GGTTAGTTCA TAATGTTGTT CCACCTATAG GGTTGCAGAT CCCTGTAGCT CCTTGGGTAC
  TTTCTCTAGC TCCTCCATTG GGCGTACAGA AACACACACA CACACACACA CACACACACA
  S
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAATATG CAAATGCAAT
  GAAATAATGA AAAAAGGAAC TGTGGGATAT TCTCTTAGAC TCTGATCTCC ACTGCAAGTG
  GAGCTGCAGT GATGGAAACT GGCAACCTTT ATTTGGGGCA GTATGGGAAG TGGCTCTCTT
  CCTGGCAATC TGGATAATTA AAAAGGACTC AGTGGTCTCA GAATCAAAAG GGTGCATGGA
  AGTGGCAAAA GTGGCAAGGC TAGGAAGGGA CTGGTTGTGT GCACTCATCT GAGTGACCAC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss45464682	mCV24949574	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss136032036	ENSMUSSNP6856451	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs30792111					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144218553 () rs orientation: forward

Symbol	Name	Function Class
Hs2st1	heparan sulfate 2-O-sulfotransferase 1	Intron
Rr586664	regulatory region 586664	451 bp proximal