rs30792590 SNP Detail

Summary

• ID
  rs30792590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75367180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTTAATACA CATATCTGTA CATACCTGTA TGTACTATAC GAACTTTCTT TTTTAATAAA
  GGTACTTTAG GGAGCTTTGG AGGTAAGGGT CTTCGCAGAA GTAGTGGATG CTGCTGGGTT
  TTGAGTGAGC GATAAATGCT CTTTTTCATA GCTGCTGGTT AAGTGAGAAC TGAACTTCCT
  GAGAACGAAT CGTTACTGAA AAGAAGTGGT TATCACTTAG AAAATATCCT TACGGAAACC
  ATTCTGAGTT GCTATGATAC TGAGTTTAAG CAGGCTAGCA TTGTAAGGAG GGGGGGGGGG
  R
  AAAGAGTAAA AAAAATCATT TAAAATTTAT TTTTGAAGTA CTTTTAAAAT GGCATATTTT
  TAATACAGGC TTAAGCATGG AGCTTAAGAA AGACAGAGAG GCATTCAAAA AGTTTAACGT
  TTTCTTTCTG TACTGGATAT TGAAACTCTG GTCTCATGCA AGGCCATATC ACTGAGCCAA
  ATCCCCCTGC TTTCCAATTT GCTTAAAATT AGAAGTTGGG AAATACATTT GTAAGCCCAA
  CACTTGAAAG CCTGAGACAG GAGGGTCAGC CTGGGCTACA CGGGGAAGGG TGGTTTCTTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss39222347	mCV24265485	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30792590					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75367180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	781 bp proximal
Cpgi6737	CpG island 6737	1354 bp proximal
Gm62951	predicted gene, 62951	630 bp downstream
Lcp1	lymphocyte cytosolic protein 1	1390 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	220 bp proximal
Tssr4477	transcription start site region 4477	887 bp downstream
Tssr126606	transcription start site region 126606	1367 bp upstream
Tssr126607	transcription start site region 126607	1486 bp upstream
Tssr126608	transcription start site region 126608	1533 bp upstream
Tssr126609	transcription start site region 126609	1792 bp upstream
Tssr126610	transcription start site region 126610	1844 bp upstream
Tssr129761	transcription start site region 129761	846 bp downstream
Tssr129762	transcription start site region 129762	868 bp downstream
Tssr129763	transcription start site region 129763	904 bp downstream
Tssr129764	transcription start site region 129764	1168 bp downstream
Tssr129765	transcription start site region 129765	1265 bp downstream
Tssr129766	transcription start site region 129766	1835 bp downstream
Tssr129767	transcription start site region 129767	1877 bp downstream