rs30794134 SNP Detail

Summary

• ID
  rs30794134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135775736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGCTAAGC CAAGCCAGTA CCTTTTGCAT TGAGCCACCC
  ATTTCATGGG CGCGGCAGGC TCTCAGGCAG GCTCTCCCCA CAGGACATCC ACAGGAAGCG
  Y
  GTGGAGAAGG ACCTGAATGA GCTACAGACT CTGATCGAGG CTCACTTCGA GAACAGGAAG
  AAGGAGGAAG AGGAGCTGAT TTCCCTCAAA GACAGGATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44964379	mCV24740617	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145548286	ENSMUSSNP986697	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30794134					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135775736 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	136 bp distal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	258 bp downstream
Tssr226	transcription start site region 226	8 bp downstream
Tssr227	transcription start site region 227	1442 bp downstream
Tssr9014	transcription start site region 9014	1268 bp downstream
Tssr9015	transcription start site region 9015	262 bp downstream
Tssr9016	transcription start site region 9016	10 bp downstream
Tssr9017	transcription start site region 9017	within coordinates
Tssr9018	transcription start site region 9018	36 bp upstream
Tssr9019	transcription start site region 9019	61 bp upstream
Tssr9020	transcription start site region 9020	807 bp upstream
Tssr9021	transcription start site region 9021	859 bp upstream
Tssr9022	transcription start site region 9022	1345 bp upstream
Tssr9023	transcription start site region 9023	1364 bp upstream
Tssr9024	transcription start site region 9024	1458 bp upstream
Tssr9025	transcription start site region 9025	1747 bp upstream
Tssr9026	transcription start site region 9026	1949 bp upstream
Tssr13890	transcription start site region 13890	223 bp upstream
Tssr13891	transcription start site region 13891	15 bp downstream
Tssr13892	transcription start site region 13892	55 bp downstream
Tssr13893	transcription start site region 13893	93 bp downstream
Tssr13894	transcription start site region 13894	850 bp downstream
Tssr13895	transcription start site region 13895	860 bp downstream
Tssr13896	transcription start site region 13896	1380 bp downstream
Tssr13897	transcription start site region 13897	1451 bp downstream