rs30794854 SNP Detail

Summary

• ID
  rs30794854
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26836791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC CGCCCGGCCT CCAAGGCTCC
  S
  GCCCCGCCCC GCCCCGGGGA GCCGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39222172	mCV22747352	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss139210894	ENSMUSSNP6533347	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324569423	CHEV_14_27928020	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30794854					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26836791 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	65 bp upstream
Cpgi6253	CpG island 6253	within coordinates
Rr287891	regulatory region 287891	791 bp distal
Rr296929	regulatory region 296929	within coordinates
Tssr124726	transcription start site region 124726	13 bp upstream
Tssr124727	transcription start site region 124727	61 bp upstream
Tssr124728	transcription start site region 124728	324 bp upstream