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rs30796078 SNP Detail
Summary
  • ID
    rs30796078
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:100096556 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CTTCGCCCCG CCCCATTCAT TTCTATGAGC ATCTTCTCTC
    CTTCAGTCCT ACCCATTCTC CAGGTTTCAG ATGAAAGCAA ATGTCTCTCA AGCCTTACCT
    S
    TTGGGTCCAG AATGCCTGCC TCTGCTGCTT TCCTTTTTCA CAGCGTGGCA CAGCGTACCA
    TTCTGTCGAT AGGGCACTTC CATGGTACCA GTCTCTAGT                       
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss45466800 mCV23824948 ABI CRAMUS_MOUSE f SNP G C G C
ss46800678 NES10745457 PERLEGEN MM_PANEL2 f SNP G C C C C G C G G C G G
ss135538217 ENSMUSSNP4340040 ENSEMBL ENSEMBL_Sanger f SNP G C
ss320848246 CHEV_3_99993163 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs30796078 SNP G G C C C C C G G C G C G C G C G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46800678 NES10745457 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:100096556 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gdap2 ganglioside-induced differentiation-associated-protein 2 within coordinates
Rr64421 regulatory region 64421 45 bp proximal
Rr69692 regulatory region 69692 645 bp proximal
Rr82369 regulatory region 82369 220 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory