rs30796194 SNP Detail

Summary

• ID
  rs30796194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41019252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAATCA AAAATTCCTG
  AGGTTCTGGG CTTCTCTCTT TTCTGAGTCT TTGTCACATG GTCTCCTATT TTTTGTTTTA
  AGTCATCACA GCCACTCTCA ACTTCATTCC TTGATGTTCT TTTCACACAA TCCAATATTT
  CAACTCGTTT TTGAGTATAA CTAATCTGTT AGCCTTATGT ACAGTGTTAG CTTTAAAAGA
  R
  AAAGAGATTA GATAGGTAAA GGGGGAGGGA TAAAACAGAA AAAACATCTT CAAAGAGAAA
  GTTAAAAACA GAAATCAAAA GTTTTAGCAG CTACCAAGAT GCTTTTCATG GTAAAGGAAC
  TGAACAGGGA CCAGTCAGGA AAGGGAGAGC CATCAGGCAG GGTGCCACTC ACTCAGAAAG
  CTCTCTGATA AAAGGTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss44964900	mCV22807591	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss50828482	NES13536826	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		G	G		G	G	G		A
ss146399538	ENSMUSSNP3057745	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss325808832	CHEV_19_41105303	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30796194					SNP	G	G	A	G	A	G	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828482	NES13536826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41019252 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr365008	regulatory region 365008	652 bp distal
Rr365009	regulatory region 365009	52 bp distal
Rr370496	regulatory region 370496	1389 bp downstream
Rr370497	regulatory region 370497	318 bp upstream
Tssr5510	transcription start site region 5510	398 bp downstream
Tssr156412	transcription start site region 156412	1415 bp downstream
Tssr159242	transcription start site region 159242	309 bp downstream
Tssr159243	transcription start site region 159243	339 bp downstream
Tssr159244	transcription start site region 159244	360 bp downstream
Tssr159245	transcription start site region 159245	369 bp downstream
Tssr159246	transcription start site region 159246	1231 bp downstream
Tssr159247	transcription start site region 159247	1245 bp downstream