rs30796703 SNP Detail

Summary

• ID
  rs30796703
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135396017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCTTACTTT AATCAAGTTT CTCTTTTTAA GGTCTGACGA ACATTAATGC ATTTTTTTTT
  TTGCCACCCA AGAACAATCA GCTGAAGAGT CCTCTAGAAA GCCACCCAAC TCTATCACCA
  TCTCCATCTT TAGTACTAAC CACCAGTCTG AGCCCCAGTA TTTGATGCCA TAGCCATCAA
  ATGTTAATAA ACACCACAAG TTGTTCTCAG CCCTAAAACA ACAAAAATTT TAGTTAAATA
  TGCTTACTTA GAAAGCTGCA GTGTTGGCCT TTACTTTTAA AAGTTCATTA AAAAAACAAA
  M
  CAGATTAAAT CTAGATGATG AAATCTTTTT ATCATTTGTC CCACTTAAGT TTTAGACTCG
  ACCCATAAAC AGAGCCAAGA TTGGTGTCTG TCTCAGAAGA CCGAAGGAAG CCTACATGTA
  GCAGAGGCGT CATGTTTGTA TCGTTTTCTG TTTTGGAGGT CAGGCACAAA ACATGGTGCC
  ATTATCCTAG AGTTTCCCCG TAATCAAAAG TCTGAAAGGT GCTATTAGTA GGTAATTTCT
  CTCTCAAATG CCAGCCCTGG AGAATCGGTG TGAGGCCCTC CTTATTATTT TGAAAATCAA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45465043	mCV25339213	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30796703					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135396017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	398 bp proximal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr398044	regulatory region 398044	within coordinates
Rr585766	regulatory region 585766	1430 bp distal
Rr585767	regulatory region 585767	1280 bp proximal
Tssr31841	transcription start site region 31841	1125 bp downstream
Tssr31842	transcription start site region 31842	1106 bp downstream
Tssr31843	transcription start site region 31843	1088 bp downstream
Tssr31844	transcription start site region 31844	1053 bp downstream
Tssr31845	transcription start site region 31845	1013 bp downstream
Tssr35823	transcription start site region 35823	988 bp upstream
Tssr35824	transcription start site region 35824	474 bp upstream
Tssr35825	transcription start site region 35825	883 bp downstream
Tssr35826	transcription start site region 35826	1009 bp downstream
Tssr35827	transcription start site region 35827	1018 bp downstream
Tssr35828	transcription start site region 35828	1069 bp downstream
Tssr35829	transcription start site region 35829	1129 bp downstream
Tssr35830	transcription start site region 35830	1155 bp downstream
Tssr35831	transcription start site region 35831	1164 bp downstream
Tssr35832	transcription start site region 35832	1232 bp downstream
Tssr35833	transcription start site region 35833	1256 bp downstream
Tssr35834	transcription start site region 35834	1683 bp downstream