rs30796728 SNP Detail

Summary

• ID
  rs30796728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122035794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACATCTTG AAAGATGTTG CACAGTTATC TGGGAGTTCT
  ATGATCTTGT AGAACAAGGG GGAAGATATC CTCTGCTTTA ATTTCTCTGA CCAGATCAGT
  R
  TAGGTTTTCA AGTATGGTTT TTGAACTCCC AGATGGCCAG TTGTACCAAT TTGTTATTTT
  TAATTAATAT GTAATGTTAT GGTAAAGTTT AACCAGAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466413	mCV25132670	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135737709	ENSMUSSNP3313557	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss320909862	CHEV_3_121945063	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30796728					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122035794 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	959 bp upstream
Rr375675	regulatory region 375675	615 bp upstream
Rr584261	regulatory region 584261	597 bp proximal
Rr584262	regulatory region 584262	970 bp proximal
Rr584263	regulatory region 584263	1053 bp proximal
Rr584264	regulatory region 584264	1708 bp proximal
Tssr31477	transcription start site region 31477	958 bp upstream