rs30797050 SNP Detail

Summary

• ID
  rs30797050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172346727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTAATG TCTTGTTTTC
  TATTTTTTGT ATGTGTATGC ATGGTGTGGT GTGCATGCAT GTGTATATAT GTGTGCTTAC
  ATATGTGTTC ATTGCATGTG TATACATGCA TGTGTATGTA TGTGTGCTTA CATATGTGTT
  CATTGCATGA TGTGCATGCA TGCATGTGGA GACTGGGGTT GGTGCTGGGT TCCTCTTTCA
  R
  TTGTTCTCTA CCTTACACAC TGAAGCAAGA TCTCTCACCT GAACCCAGAG CTTGCTGATT
  CCATTAATCT AGGAAGCCAG ACTGCTCTGG GACCTTGACC TTGACTCTGT TTCTAGGGAA
  TCACTGGAGG GACTGTCATA TCTGCCCCAC CCATCAGGCA TTTATGTGGG CTTGTGGGTT
  CCGAACTCTG GTCTTCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44963869	mCV24953487	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss320125841	CHEV_1_174449291	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30797050					SNP	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172346727 () rs orientation: forward

Symbol	Name	Function Class
Cfap45	cilia and flagella associated protein 45	1970 bp upstream
Cpgi1054	CpG island 1054	1803 bp proximal
Gm70635	predicted gene, 70635	193 bp downstream
Rr372460	regulatory region 372460	within coordinates
Rr423607	regulatory region 423607	934 bp distal
Rr423608	regulatory region 423608	1394 bp proximal
Rr423609	regulatory region 423609	1895 bp proximal
Tssr10237	transcription start site region 10237	1946 bp upstream