rs30797314 SNP Detail

Summary

• ID
  rs30797314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48589863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTACGT GGACACCTCC
  AGGTGTCTTC TTTAACAGGT TCCCCCATAT CTATCCTTAC CTGATGTACC CAGTTCCTGT
  GTGGCTTGCT CCTCACACAC TCTCTACCCA CGCTGAGGGT GTCAGCCTTG AAACTCTAGT
  GTGGGGATTA GGAGACTTTG ATGTTTATCC AGTTCAGCTG TTTAGCTATC TTTATGTCTG
  R
  GCACACCAAG GCTTCTCTTG GGCCCGGTTT CTCTTTGCAC ATGAGAATTA TGCCCACGTA
  ACCTTCCCAT CTGCACATTT TTACCTGAGG GAGTGGATAG AACTCAAAAA CAAATAAACA
  AAACAACTCC CCCCCCCCCC AAAAAAAAAG CTTGGGCTAT GAGATGGGAC ATGGGGGCTG
  GGAAAATGGT TTGGATCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45964473	mCV23167864	ABI	CRAMUS_MOUSE	f	SNP		G					A	A
ss51306579	NES13769673	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A		A	A	A		G	G	A	G		G
ss133165045	ENSMUSSNP3864985	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321794030	CHEV_6_48562928	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30797314					SNP	A	G	A	A	A	A	A	A	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51306579	NES13769673	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48589863 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	within coordinates
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	within coordinates
Gm67224	predicted gene, 67224	within coordinates
Rr135554	regulatory region 135554	1863 bp distal
Rr135555	regulatory region 135555	738 bp proximal
Tssr60741	transcription start site region 60741	809 bp downstream
Tssr60742	transcription start site region 60742	820 bp downstream
Zfp775	zinc finger protein 775	within coordinates