rs30797638 SNP Detail

Summary

• ID
  rs30797638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117770842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTACAGT GTCTGCAGTG
  CTGTAAGATT CACTGTGGTA CTACAATAGT TGAGCCTCAT CTATGATGTG CTGTGTTCAA
  GGCACCTGTA GACCAGGTGC ATCTCCCAGG TTATGCCATT ACAACCACAG CCAGGTTTGT
  TGTTGTTTTG TTTTGTTTTT TGTTGTTGTT TGTTTTTTAA AGACCATGGA TAATGGAGTC
  Y
  TGTGTTAAAA ATCTGTTTTC AGGAATGTGG ACATCATACT TAAAATACAC GAACCTTCTC
  TTAAGGGGCA AACTGGATGT TTGATGAGAT GGTCTTTGTG CAGAACTGTT TTCCTTTCTG
  CTTCATTTCA CTTCCTGCAT GTGTGCTTTT TTTTTTTCTG TTGTAATTTC CCACCTCTGA
  TTACATCCAA AGGGCACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45465049	mCV23489823	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135695336	ENSMUSSNP5627326	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320900748	CHEV_3_117680111	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30797638					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117770842 () rs orientation: forward

Symbol	Name	Function Class
Gm32344	predicted gene, 32344	within coordinates
Rr583879	regulatory region 583879	1185 bp distal
Rr583880	regulatory region 583880	1365 bp distal