rs30798100 SNP Detail

Summary

• ID
  rs30798100
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA GTCATGAAAA CCTGTAGTCT
  S
  TATTCTAGTT TTGACCCCTG TCCTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44964329	mCV23137243	ABI	CRAMUS_MOUSE	f	SNP		G					C		G
ss49513619	NES12839733	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	G	G		G	G	C	G		G	C	C	G		C
ss145704584	ENSMUSSNP4243587	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss320045523	CHEV_1_151948652	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30798100					SNP	C	G	C	C	G	G	C	G	G	C	G	G	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513619	NES12839733	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1201 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	1648 bp upstream
Rr420121	regulatory region 420121	1716 bp distal
Rr420122	regulatory region 420122	1481 bp distal
Tssr242	transcription start site region 242	1278 bp upstream
Tssr9221	transcription start site region 9221	1765 bp downstream
Tssr9222	transcription start site region 9222	1416 bp downstream
Tssr9223	transcription start site region 9223	573 bp downstream
Tssr9224	transcription start site region 9224	465 bp downstream
Tssr9225	transcription start site region 9225	340 bp downstream
Tssr9226	transcription start site region 9226	327 bp downstream
Tssr9227	transcription start site region 9227	249 bp downstream
Tssr9228	transcription start site region 9228	209 bp downstream
Tssr9229	transcription start site region 9229	196 bp downstream
Tssr9230	transcription start site region 9230	455 bp upstream
Tssr9231	transcription start site region 9231	607 bp upstream
Tssr9232	transcription start site region 9232	647 bp upstream
Tssr9233	transcription start site region 9233	1120 bp upstream
Tssr9234	transcription start site region 9234	1124 bp upstream
Tssr9235	transcription start site region 9235	1164 bp upstream
Tssr9236	transcription start site region 9236	1201 bp upstream
Tssr9237	transcription start site region 9237	1220 bp upstream
Tssr9238	transcription start site region 9238	1249 bp upstream
Tssr9239	transcription start site region 9239	1290 bp upstream
Tssr9240	transcription start site region 9240	1312 bp upstream
Tssr9241	transcription start site region 9241	1338 bp upstream
Tssr9242	transcription start site region 9242	1358 bp upstream
Tssr9243	transcription start site region 9243	1482 bp upstream
Tssr9244	transcription start site region 9244	1527 bp upstream
Tssr9245	transcription start site region 9245	1547 bp upstream
Tssr9246	transcription start site region 9246	1584 bp upstream
Tssr9247	transcription start site region 9247	1723 bp upstream
Tssr14127	transcription start site region 14127	1967 bp upstream
Tssr14128	transcription start site region 14128	1912 bp upstream
Tssr14129	transcription start site region 14129	1837 bp upstream
Tssr14130	transcription start site region 14130	260 bp upstream
Tssr14131	transcription start site region 14131	204 bp upstream