rs30798439 SNP Detail

Summary

• ID
  rs30798439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38939208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAAGAGGA AACTGTCCCT GTAGAAGCTG CCATTGTTTC
  AGCTGAAGCC TACAGACTGC TCTGTGGACA GAATTCCTGC TATGAGACTA ACCGCGCGCC
  R
  TGGGTGCCAG CGCGCCCCTC TCTTCCTTTG AGAAGTTGGA GCTTAGCTGG CATCGAGGCC
  TTGGACCCGA GGGACAGCGA AGAGGGGCGC AAGCTCACG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466521	mCV25414928	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss134846129	ENSMUSSNP2785779	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320724092	CHEV_3_38783981	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30798439					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38939208 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	1881 bp upstream
Gm56780	predicted gene, 56780	630 bp upstream
Gm65329	predicted gene, 65329	within coordinates
Rr575715	regulatory region 575715	1742 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	565 bp distal
Rr575719	regulatory region 575719	477 bp proximal
Rr575720	regulatory region 575720	1043 bp proximal
Rr575721	regulatory region 575721	1391 bp proximal
Tssr28930	transcription start site region 28930	253 bp upstream
Tssr28931	transcription start site region 28931	624 bp upstream
Tssr28932	transcription start site region 28932	651 bp upstream
Tssr28933	transcription start site region 28933	683 bp upstream
Tssr28934	transcription start site region 28934	784 bp upstream
Tssr28935	transcription start site region 28935	817 bp upstream
Tssr28936	transcription start site region 28936	829 bp upstream