rs30798475 SNP Detail

Summary

• ID
  rs30798475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144103069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGAGGCA ACTTGCACTG
  GAAATAGTTG GTGCAGAAAC AACCACCCTC CTTTTGTTTG TTTGTATTTA AGACAAATGA
  AGAAAATCCA GATGAATTGG TGTTTTTGCT TTGTTTGTTT CCTTAAAGAG AACATATTCG
  CTCATTAGGA AGGCTAGATA GACAACCAGC CCCGGAAACA GGAGACTGAA GTCGATGTCT
  Y
  TCCGGAGCTA TGACAAGGAC ACTTGTCCCC GAGCTCCCCA ACCCACACTG CACAATACAA
  AAGGGACATC CTGGGTGCAC AGCAGAGGGC AGAATCAACT TGTGCCAAAG ATGCCATCTC
  TTGACAGTGG GGCAGTGCTC TGTGCACTTG GGACGTCCAC TGTGAAGTCA TGGAGAAGCC
  AACAGCACCA TCCCTTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45465344	mCV24080305	ABI	CRAMUS_MOUSE	f	SNP		T						C		C
ss47018662	NES10852643	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C	C	C	C	C
ss136030732	ENSMUSSNP3694404	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30798475					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018662	NES10852643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144103069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	517 bp distal
Gm65349	predicted gene, 65349	569 bp upstream
Rr586642	regulatory region 586642	1816 bp distal
Rr586643	regulatory region 586643	590 bp distal
Rr586644	regulatory region 586644	420 bp distal