rs30798601 SNP Detail

Summary

• ID
  rs30798601
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC CTCTCCAGTG TTCCAGTGTG
  K
  GGGGTTCTTG ACTAGAGTTA GAATG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45465157	mCV22676205	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss134653779	ENSMUSSNP472728	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
ss320673714	CHEV_3_17688572	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30798601					SNP	T	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	1441 bp distal
Cpgi12995	CpG island 12995	1842 bp proximal
Gm10742	predicted gene 10742	1674 bp upstream
Gm56811	predicted gene, 56811	1434 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	1349 bp upstream
Rr573842	regulatory region 573842	1445 bp distal
Rr573843	regulatory region 573843	944 bp distal
Rr573844	regulatory region 573844	260 bp proximal
Rr573845	regulatory region 573845	761 bp proximal
Rr573846	regulatory region 573846	885 bp proximal
Rr573847	regulatory region 573847	1491 bp proximal
Rr573848	regulatory region 573848	1661 bp proximal
Tssr28480	transcription start site region 28480	1155 bp upstream
Tssr28481	transcription start site region 28481	1320 bp upstream
Tssr28482	transcription start site region 28482	1384 bp upstream
Tssr28483	transcription start site region 28483	1479 bp upstream
Tssr28484	transcription start site region 28484	1548 bp upstream
Tssr32677	transcription start site region 32677	1727 bp upstream
Tssr32678	transcription start site region 32678	1035 bp downstream