rs30798741 SNP Detail

Summary

• ID
  rs30798741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTGGGC AGTGCGAGCA
  GACCCGCCCG GCCCTCGGCT TTTCCGGGAG GAAGGCATAT CTCACTCCCG CGTGCAGCCC
  GCTATGAGAC AGAATAGAGG GCCTTTAGTG ATGGAGTATG GAGATGACAG TTGTCGTCAT
  GGAGAATGTT AGTTAGAAAG CTGTGATCAT TACAGGCTGG GAAGGGTGCG GTTAGGGCAA
  Y
  ACCGTGCAGG AGTCAGTAGG AACGAATTCA TTGGAGACAA TACTCGCATT TGAAGGACCT
  AGAGGGGTTC GTGAACCTCA GCTCGCTCAC CCACTATCTC ATTTTACTTA AAATAATCAC
  TACTGAATTG AAAGAACTAG TTCATCATAA GGCTCAAGTA ACCGCGGCGC GTTGCCCAAA
  CATTTCATTT ACATTCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45466036	mCV24054164	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss320920402	CHEV_3_123211949	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30798741					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	73 bp distal
Gm9369	predicted pseudogene 9369	911 bp downstream
Rr397991	regulatory region 397991	1997 bp downstream
Rr584524	regulatory region 584524	1977 bp distal
Rr584525	regulatory region 584525	157 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	279 bp proximal
Rr584528	regulatory region 584528	1865 bp proximal
Snhg8	small nucleolar RNA host gene 8	695 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	965 bp upstream
Tssr31551	transcription start site region 31551	463 bp downstream
Tssr31552	transcription start site region 31552	416 bp downstream
Tssr35502	transcription start site region 35502	690 bp upstream
Tssr35503	transcription start site region 35503	102 bp upstream