rs30798964 SNP Detail

Summary

• ID
  rs30798964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26679369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTTCT TCTCGACTCT
  TAGGAAATGT CTAGAGGCTG AGATCTACCA TTTTACCTGC CCTTTTCTGG CTAATTGCAT
  GTCACTCCCT CAATCTTAAG TTAGAGGACA TCACCCAGAG AAAACTTACT GTGCTCCAAA
  TATAGATCAA CTGTTTTCAC AATGGTTGCT CTGTTTCTCT GTGTGGCATC ACAACCTCCA
  Y
  CCTCCTTACA TGTACACATA GGAACACACT CAAGGCTATA CCCAACTAAA TAGTCTTGAG
  TGAACAGAGA GCTCCTAAGC TAATCCCACA GACTTTTGCT ATACAAGTCC ATACTTTATT
  TCCAAGGAAA TGTGGATGAC AGGAAATCTT ATAACATAGG CTTAGGCAGT ATATGCATTT
  TAAATCTGGA GTTTAAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45465946	mCV22809599	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss134696763	ENSMUSSNP2369165	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30798964					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26679369 () rs orientation: forward

Symbol	Name	Function Class
Gm55656	predicted gene, 55656	965 bp downstream
Gm65182	predicted gene, 65182	within coordinates