rs30799887 SNP Detail

Summary

• ID
  rs30799887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109930929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC AAGGCTTCCC TGAAACCTGT
  R
  CGCACGCATG CGCACGAGAG TCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss45466445	mCV22909546	ABI	CRAMUS_MOUSE	f	SNP		A				G	G
ss60432098	NES15931035	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A			G	G	A
ss135589152	ENSMUSSNP7208012	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30799887					SNP	A	A	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60432098	NES15931035	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109930929 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583457	regulatory region 583457			393 bp distal