rs30800191 SNP Detail

Summary

• ID
  rs30800191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23123582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTAGGGA CTGTGCCCCT
  TTAGAAGGCC ACAGATCATT CTAATACCTA CCTAAGATTG TTTCCATCTA TCAGAACCAA
  TTTTTGCCCA CCTGGGGATG ATGCTAACCA CACACACACA CACACACACC CGTGGGAATG
  TCTAGCCCCA TTTTCAAGTG TCTTGAGTGG ATCGTAGCGA GGTGAGTGCA GAGCCATGTT
  Y
  AGCTTCCTGT TGAGAAGATA GGTTCCTGAG TTTGTTGGGT TCTTGGGGTT TGCTTGTGAA
  TTGCAGACCA GGTATACGTC TCTTGAGTCT TTGGGTTATT TGGCCTAGCA GAAAAATCCC
  TTCGAGATGG AGACCCACCC TGGTGGTGCT TATTTGTCCC TAGTCTGGAA GAGAAGGAGC
  CCTCCTTCAT CTCTTGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss44963952	mCV24752514	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146216221	ENSMUSSNP4415745	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss325768052	CHEV_19_23220708	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30800191					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23123582 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klf9	Kruppel-like transcription factor 9			Intron
				Noncoding-Transcript-Variant
Rr545293	regulatory region 545293			within coordinates