rs30800247 SNP Detail

Summary

• ID
  rs30800247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144991173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTAGTAA ATACAGCTTC
  TTAAACAAAG GCGGTGAAAG GATCAGGAGA GCCGGCTCGC CGGAAGAGTG CAGGCAGCTC
  TTCCAGAGGA CCAGGTTCAA TTCCCTGAAC AGTGAGTGTC AAGTGGCTCA CCGCCATCTG
  TAACTACAGT GCCAGAGGAC CCAGGGCATC TGGTCTCCAA GGGAACTCAT TCATGTGCAC
  R
  CACGCATGCA CGCACGCACA AACAGAGAGA GAGAGGGGAC AGAGAGGACA GAGAGGCACA
  CTTAAAAACA AATTGTTGAG AGAAAAAAAG AGAGAGAGAG AAAATTGGCC CACAAAGAGA
  GTAAAGCACG CTGTACAAGC CTGACTGACA GCCTGACAGT TCTCCTTCCA GAACGCTCAA
  GTCTTGGTGG GAAAGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45965891	mCV23990249	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss133960811	ENSMUSSNP7203376	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30800247					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144991173 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Rr641039	regulatory region 641039	within coordinates
Rr641040	regulatory region 641040	1600 bp proximal