rs30800760 SNP Detail

Summary

• ID
  rs30800760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13284683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAGTGAAC AAAACAAATA CTCGAAAACA
  AGCTTGGAAT GTCACTACTT TTGGCTAAAT ACCAAGTTGT TGTTTTTTCT TTTCTTTTCC
  CTCCCACACA TAACATTCTT TCTTGGGATT TTTTTTTTCT CCTAAAGTGT GTGTGCGTGC
  R
  TGTGTGCTAC TGAAAAACAT GACCTGCCTT GAACATGCAT ACTATCCTTT AAAACAGAGC
  TCTGTAAGAA ATATTCCTCT CGGTACACGA AGCATCCTGA ATAACAGCTG AGTCCACACT
  TAACCCAATT TGCTCAGAAC AACTTCCTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss44965395	mCV22807585	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss148618457	ENSMUSSNP671635	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319642506	CHEV_1_13204540	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30800760					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13284683 () rs orientation: forward

Symbol	Name	Function Class
Ncoa2	nuclear receptor coactivator 2	within coordinates
Rr370880	regulatory region 370880	355 bp upstream