rs30801099 SNP Detail

Summary

• ID
  rs30801099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102121307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGTAGG ATCCATGTCC
  CTAAGAGTGG CCTTACAGGG GTCTGTCTAT CACCATTGAA TCTTGCTCCA TCTTCCTTTG
  GTTTCTATGC TTGACTGTTA CTTCCTGGAA ATCTGATGGC TTCCTGCCTT TTGTTATATT
  ACTGAGTTCC TGTAGACTTG CGCTGTCTCA TTGGATTTTA TCAGGTGATA TACCTCAGCA
  R
  ATTTATGAAG CACTGTGGTG TCAAAGAAGG TTGGAAAGAG AAGGGACTGT CCAGGGCTTG
  GGGGATTTAT CTGCTTATCA TGACTGCAGA AGAATGCACT ACGTGTGTGC CTCCAGTGGG
  AAGGCAAGTC CCTCCTCGTG GGTCTTATCA CAACTTCTTG ACAAAGTTCT AAAAATATTC
  AGGCCTTTCA GCAGCAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39222811	mCV22290647	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss49352297	NES12571306	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	A	G	A	A	A
ss146740343	ENSMUSSNP2021759	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30801099					SNP	A	A	G	G	G	G	G	G	A	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49352297	NES12571306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102121307 () rs orientation: forward

Symbol	Name	Function Class
Lmo7	LIM domain only 7	within coordinates
Rr296718	regulatory region 296718	within coordinates
Tssr126927	transcription start site region 126927	167 bp upstream
Tssr126928	transcription start site region 126928	175 bp upstream
Tssr126929	transcription start site region 126929	256 bp upstream
Tssr126930	transcription start site region 126930	443 bp upstream