rs30801686 SNP Detail

Summary

• ID
  rs30801686
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153330285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCCATGA GATCTGACCC
  CCTCTTCTGG TGTGGCAGAA GACAGCTACA GTGTACTTAT GTATAATAAA TAAACCTTAG
  GGCTGGAGCG AGCGGAGTTG ACTGGAGCAA GCGGAGGTCC TAAAAATTCA ATTCCCAACA
  ACCACACGAA GGCTCACAAC CATCTGTACA GCTACAGTGT ACTCACATAC ATAAATCTTT
  W
  AAAAAAATGA AAGAAAAGCA TGTTTAAGTG CAGTGAGATA ATCTACTATG CAAGCTACTT
  AATCTAACTG GTGCTTAGAC CTCCATCTCA TGTGAAGAGA TCACTGCTTT GAGACTGTGG
  CAATGACATC GACTAACATC CAAATCTGGG AAACTAGAGC TGGAAGAACA AGTTCTGGAC
  CTATGGAGGG CTCTTGAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44965115	mCV23109247	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30801686					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153330285 () rs orientation: forward

Symbol	Name	Function Class
Dhx9	DExH-box helicase 9	1219 bp downstream
Rr420677	regulatory region 420677	689 bp distal
Shcbp1l	Shc SH2-domain binding protein 1-like	1965 bp downstream