rs30801966 SNP Detail

Summary

• ID
  rs30801966
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143906304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAGTGA AATTAATGCA
  GCCATATTAA TTTAAAAATA AAAGCCTTCC CCCTCCCTCC CATGTTTCTT TCACTTGGCT
  GAAGATGCCC GCAGAGCGGG TACAGGTTGC CATTATCAGA ATAACCAAAC CTCATTTTAC
  TCTGATACCA CCGGAGGAGG CAAACACACC CATACTCCCG CACCAAACTG CACCGGGATC
  W
  TGGGCAGCAT TCACCAGCCA CAGATAAGGC CAACCACAAC AGCAGGGTTA AACTTTGAAT
  AAAATATCCC ACCCACTGAT TTAACAGCTT CAGGAAGATC ACTATACAGA CAAAGGTTCA
  GAACAGACAC TTAAATAGAA GGAAAGTCTT CTTTTCTCTC TCTCTCTAGT GGTATTGGTG
  TGGTGTGTGT GTGTGTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45466968	mCV23166428	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30801966					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143906304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13893	CpG island 13893	1530 bp distal
Cpgi13894	CpG island 13894	1268 bp proximal
Gm43445	predicted gene 43445	1281 bp upstream
Lmo4	LIM domain only 4	Intron
Rr375847	regulatory region 375847	within coordinates
Rr586595	regulatory region 586595	1292 bp distal
Rr586596	regulatory region 586596	1860 bp distal
Rr586597	regulatory region 586597	791 bp distal
Rr586598	regulatory region 586598	within coordinates
Rr586599	regulatory region 586599	1442 bp proximal
Rr586600	regulatory region 586600	1779 bp proximal
Tssr35961	transcription start site region 35961	1153 bp upstream
Tssr35962	transcription start site region 35962	384 bp downstream
Tssr35963	transcription start site region 35963	1372 bp downstream
Tssr35964	transcription start site region 35964	1419 bp downstream
Tssr35965	transcription start site region 35965	1757 bp downstream
Tssr35966	transcription start site region 35966	1807 bp downstream