rs30801986 SNP Detail

Summary

• ID
  rs30801986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149149192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACAATGA CTGCGCAGGA
  CATATTCAAG AGCAGCCCCA TGGCTCCCAC AGATACTTTC AATCAGCCTT TCCTGGCAAG
  CCTCAGCTTA CTGTACAGCT CAGTAAAAGA GTTTGAAAAG AAACTCTAAT TGCTAGGTAA
  GCCATAAGTC AAATTCCTCT TTTCTCACCG TGAAGGGTTT TTATTACCCA CGGCTGTAAA
  Y
  GCCAGCCCCC ATCCTTGCAG AATAGCTTTC AGACCAGAGG ACAAATAAAA TGCTAAGAGG
  CAAAAGATAT GTATCTGTTA AATTCTACAT ATAGCACCCT AACAAATGCC GGAGGCAGAG
  AGCTAGCCCT CTGTACAGTA GCAACACTTG TGCCGATGGG CTTCTTTATG CTAGCAATGA
  CAGAGTTCCA TGCCCTGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45466467	mCV24054259	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss51052144	NES13892897	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	T	T		T	T	C		T
ss136071431	ENSMUSSNP504016	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss321018993	CHEV_3_149106519	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30801986					SNP	C	C	T	T	T	C	T	C	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052144	NES13892897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149149192 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1968 bp upstream
Rr587324	regulatory region 587324	1228 bp proximal
Rr587325	regulatory region 587325	1627 bp proximal
Tssr36100	transcription start site region 36100	1631 bp downstream
Tssr36101	transcription start site region 36101	1698 bp downstream
Tssr36102	transcription start site region 36102	1712 bp downstream
Tssr36103	transcription start site region 36103	1796 bp downstream
Tssr36104	transcription start site region 36104	1821 bp downstream
Tssr36105	transcription start site region 36105	1898 bp downstream