rs30802024 SNP Detail

Summary

• ID
  rs30802024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153628184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA GTTAGGACCC ATTACACAAA
  Y
  GCTTTGGACA ACAACTTTGG TGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44964263	mCV24629790	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss60819910	NES16430905	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	C	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30802024					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819910	NES16430905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153628184 () rs orientation: forward

Symbol	Name	Function Class
Gm28512	predicted gene 28512	674 bp downstream
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr396400	regulatory region 396400	441 bp downstream
Tssr9483	transcription start site region 9483	562 bp downstream
Tssr9484	transcription start site region 9484	531 bp downstream
Tssr9485	transcription start site region 9485	438 bp downstream
Tssr9486	transcription start site region 9486	404 bp downstream
Tssr9487	transcription start site region 9487	345 bp upstream
Tssr9488	transcription start site region 9488	372 bp upstream
Tssr9489	transcription start site region 9489	414 bp upstream
Tssr9490	transcription start site region 9490	550 bp upstream