rs30802168 SNP Detail

Summary

• ID
  rs30802168
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130486543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAG AGAGCAGGCT TGGCTCCAGC
  M
  GTACGGAATC TCAGCCTGTG GGTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45466667	mCV22791797	ABI	CRAMUS_MOUSE	f	SNP		A					A		C
ss61080660	NES16590448	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	A	C		A	C	C	C		A	C	C	A		A
ss135897794	ENSMUSSNP1762206	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							C
ss320966012	CHEV_3_130395812	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30802168					SNP	C	A	C	A	A	C	A	A	C	C	C	C	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080660	NES16590448	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130486543 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	179 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398015	regulatory region 398015	1876 bp downstream
Rr398016	regulatory region 398016	1144 bp upstream
Rr585189	regulatory region 585189	1970 bp distal
Rr585190	regulatory region 585190	1381 bp distal
Rr585191	regulatory region 585191	747 bp distal
Rr585192	regulatory region 585192	1337 bp distal
Rr585193	regulatory region 585193	1104 bp distal
Rr585194	regulatory region 585194	1232 bp proximal
Rr585195	regulatory region 585195	1319 bp proximal
Rr585196	regulatory region 585196	1847 bp proximal