rs30802336 SNP Detail

Summary

• ID
  rs30802336
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135799709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGAGCCTG ACCTCTGGGT ATCTTAAGAC
  CTGCTTCATC ACCAAAGCAA ATGGTGAACC TACCCAACCT TCCTCCCAGG GAAAAGAAAA
  CTGAGTCCGA GGGCTGCAGG AAGTGAGGAT GATACTGGGG GGTTGGGTGG GAACGTCATT
  S
  TTGAGGGCCT ACAGCAGTCT CCCTTGTTGA CTTGAACGTT CTACATGATT TTCTCAAATT
  GACTGAGTAA GTGGATAGTC CCTGAAGCCC AGGACCTGGG TATCCTTTCT TGGGCGAACA
  TACACTATAT GGAGGGGCAG GGGTACTGTA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44965411	mCV23238882	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C	C
ss145548844	ENSMUSSNP6703919	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C
ss319993923	CHEV_1_137768548	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30802336					SNP	G	G	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135799709 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	1821 bp downstream
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	1404 bp upstream
Tssr13903	transcription start site region 13903	82 bp upstream