rs30802769 SNP Detail

Summary

• ID
  rs30802769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108640453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGTGTGT GTGTGTGTGT GTGTGAGCTA CAGTATATGG
  AGAAGACTTA CAAATAAAGA GCCTAGTTAA ACTGCACGGA GGAAATGCAA CTATTTGATG
  R
  ATAGGTTAGG TTTCTGTGTG TGCAGCAGTT GTTGGAGTTG TTGGTTTTAG TTTTGTGGTG
  GTTTTGGTTG TTCTGGTTTT GGTTTTCCTA AAGCTCAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45965924	mCV24297772	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30802769					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108640453 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Cpgi17812	CpG island 17812	1759 bp distal
Rr399817	regulatory region 399817	1610 bp downstream
Rr636159	regulatory region 636159	1505 bp distal
Rr636160	regulatory region 636160	88 bp proximal
Tssr58078	transcription start site region 58078	1715 bp downstream
Tssr58079	transcription start site region 58079	1496 bp downstream
Tssr58080	transcription start site region 58080	1149 bp downstream
Tssr58081	transcription start site region 58081	714 bp downstream
Tssr58082	transcription start site region 58082	350 bp downstream
Tssr58083	transcription start site region 58083	1247 bp upstream
Tssr58084	transcription start site region 58084	1521 bp upstream
Tssr62392	transcription start site region 62392	1493 bp downstream