rs30803599 SNP Detail

Summary

• ID
  rs30803599
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143565363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGCTAAT GAATTATTTG
  GTCTTTCTCT TTCTTTCTCT TTTCATGCTG ACCTTTCTCA CAGGTGGGTT AGTCTGCTCC
  TACAAAATCT GGCACTGGAA CCATTTATGC AACCAAATGG CACTTTAGCA GAACAGTGTG
  TAGTGCATAG GTTGAGACAC AGTGGTGAAG AAGGAAATAT AACAATCCCC AATTCTGATA
  M
  TTCGCTTACC ATGAGATATA GAACAGAGGA TGTTTTTTGC TGTCTCTATA CTTATTTCCT
  TATCTTTAAA GTGAGAACAG AGAATTATAG AAAGGTGACT GCTGTTTAGT TTGAAGAAAA
  GAAAGAAAAA AGAATGAGAT TCTTATCTTC ACCAGGATTC CTCTAGTCAA CTGTGCTATA
  TCTCATTCTG TCCTTTATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45467390	mCV23568974	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss51659582	NES14643745	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A		C	A	A	A	C	A	A	C	C
ss136026646	ENSMUSSNP930662	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30803599					SNP	C	C	A	A	A	C	A	A	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51659582	NES14643745	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143565363 () rs orientation: forward

Symbol	Name	Function Class
Gm33925	predicted gene, 33925	within coordinates
Gm40160	predicted gene, 40160	1833 bp downstream