rs30804309 SNP Detail

Summary

• ID
  rs30804309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95031078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG TATACAACCA CGTGTCGGGT
  R
  GTGCACCTAT GCAGAGGCCA GGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45468702	mCV24559500	ABI	CRAMUS_MOUSE	f	SNP		A			G		A
ss46771727	NES10667196	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G		G	A	A		G	A	A	G
ss135510026	ENSMUSSNP5357154	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss320841118	CHEV_3_94927689	CHEVERUD	SCREENING_POP	f	SNP									A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30804309					SNP	G	A	A	G	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771727	NES10667196	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95031078 () rs orientation: forward

Symbol	Name	Function Class
D3Umi9	DNA segment, Chr 3, University of Michigan 9	1126 bp distal
Rr580818	regulatory region 580818	1757 bp distal
Rr580819	regulatory region 580819	537 bp proximal
Rr580820	regulatory region 580820	759 bp proximal
Tmod4	tropomodulin 4	mRNA-UTR
Tssr967	transcription start site region 967	670 bp upstream
Tssr30490	transcription start site region 30490	1235 bp downstream
Tssr30491	transcription start site region 30491	684 bp upstream
Tssr30492	transcription start site region 30492	715 bp upstream
Vps72	vacuolar protein sorting 72	716 bp downstream