rs30804323 SNP Detail

Summary

• ID
  rs30804323
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACTGTT GGGCAAAACT
  AATCAAGTGT CCACACTACG GCTTCACCCT GCCTCTCCTC TTATCACCTA CTCCCCCAGA
  ACAGGGAAGG GTGGCAACCA CTACATGGTC CTTTGGCACA AACACAACCT GAATCTTAAG
  AAGCAGTGAT GTTGACTGAG GGAGTTCCCA CCCTCTCTGC GCCCCTCGCT TGCCACAGAG
  W
  AAACAAGTCC ACACAGGGTT AAGAGAATCT AAAATCAATT CACTTTAATC GGGTCTAAAA
  GAAAAACCTG CCTTGCAATT ACAAAAGAAA AAGGAAAAAC CCCCGAAACT GCACATCAGA
  AAAACACATC ACATGAAGAA CAAACCAAAA TCGGGGCTGG GGACCATCTT GAACATCGGG
  CGCTGCCTTT GACCTCCCGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45467179	mCV23997498	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss320953856	CHEV_3_127111422	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30804323					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202153 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	183 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1206 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	453 bp proximal
Tssr35571	transcription start site region 35571	376 bp downstream
Tssr35572	transcription start site region 35572	433 bp downstream
Tssr35573	transcription start site region 35573	482 bp downstream
Tssr35574	transcription start site region 35574	510 bp downstream
Tssr35575	transcription start site region 35575	540 bp downstream