rs30805040 SNP Detail

Summary

• ID
  rs30805040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13444790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCG GCGAGAAGGT CGCGGAAAAC
  M
  TAGTCCCAGA GGTGCCTCCC GCGCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44965655	mCV23396719	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30805040					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13444790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi41	CpG island 41	within coordinates
Gm29570	predicted gene 29570	within coordinates
Gm51852	predicted gene, 51852	1636 bp downstream
Gm70663	predicted gene, 70663	within coordinates
Ncoa2	nuclear receptor coactivator 2	483 bp upstream
Rr395968	regulatory region 395968	1858 bp downstream
Rr407895	regulatory region 407895	494 bp distal
Rr407896	regulatory region 407896	873 bp distal
Rr407897	regulatory region 407897	within coordinates
Rr407898	regulatory region 407898	286 bp distal
Rr407899	regulatory region 407899	141 bp proximal
Tssr5965	transcription start site region 5965	1648 bp downstream
Tssr10990	transcription start site region 10990	902 bp upstream
Tssr10991	transcription start site region 10991	675 bp upstream
Tssr10992	transcription start site region 10992	497 bp upstream
Tssr10993	transcription start site region 10993	491 bp upstream
Tssr10994	transcription start site region 10994	384 bp upstream
Tssr10995	transcription start site region 10995	303 bp upstream
Tssr10996	transcription start site region 10996	155 bp upstream
Tssr10997	transcription start site region 10997	91 bp upstream