rs30805392 SNP Detail

Summary

• ID
  rs30805392
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191228767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT AATATCACTA GTATTCAATA
  W
  TTAGCTTTAT TAGGCTAAGG TGTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44966149	mCV23987558	ABI	CRAMUS_MOUSE	f	SNP		A	A					T		T
ss49546093	NES12904498	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A		A	T	A	T	A	T	T	T	A
ss146507195	ENSMUSSNP2107067	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30805392					SNP	T	A	A	A	A	A	A	T	A	T	A	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546093	NES12904498	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191228767 () rs orientation: forward

Symbol	Name	Function Class
Gm37432	predicted gene, 37432	1260 bp upstream
Rr426169	regulatory region 426169	1990 bp distal
Rr426170	regulatory region 426170	1411 bp distal
Rr426171	regulatory region 426171	1099 bp distal
Rr426172	regulatory region 426172	1594 bp proximal