rs30805460 SNP Detail

Summary

• ID
  rs30805460
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177274386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT AGGATGTCAT TTGATGAGTT
  S
  TTGGTTAAAT TTCTGGAAGA GGTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44965557	mCV24632044	ABI	CRAMUS_MOUSE	f	SNP		G	C					G	G
ss49537266	NES12834152	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G		G	G	G	G	G	G	G	C
ss146346042	ENSMUSSNP3847729	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30805460					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49537266	NES12834152	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177274386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1082	CpG island 1082	1250 bp proximal
Rr29056	regulatory region 29056	within coordinates
Tssr312	transcription start site region 312	339 bp upstream
Tssr313	transcription start site region 313	1030 bp upstream
Tssr10352	transcription start site region 10352	1148 bp downstream
Tssr10353	transcription start site region 10353	295 bp upstream
Tssr10354	transcription start site region 10354	327 bp upstream
Tssr10355	transcription start site region 10355	369 bp upstream
Tssr10356	transcription start site region 10356	457 bp upstream
Tssr10357	transcription start site region 10357	533 bp upstream
Tssr10358	transcription start site region 10358	627 bp upstream
Tssr10359	transcription start site region 10359	644 bp upstream
Tssr10360	transcription start site region 10360	1379 bp upstream
Tssr10361	transcription start site region 10361	1423 bp upstream
Zbtb18	zinc finger and BTB domain containing 18	within coordinates