rs30805611 SNP Detail

Summary

• ID
  rs30805611
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:166227772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGGGAGGT GGCATTCGTC GGGCTTGCCC AATCTGGAGT
  CCTAAAGTCA GATTCTTCAT TTTCTAGAAG ACAAATAAGG AAGGGCAAAA ATAATGACAA
  K
  ATGTAACATG GTTTACATGT TGGAGGGAGG TCATACTTTT AATTTTTGAT CTGGAGCTCA
  TCAGAAGTGA ACCACAAGTT TAACAAATAA CCAGCCTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss44965357	mCV23027491	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss146018889	ENSMUSSNP611541	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs30805611					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166227772 () rs orientation: forward

Symbol	Name	Function Class
Pogk	pogo transposable element with KRAB domain	Intron
Rr422579	regulatory region 422579	1227 bp proximal
Rr422580	regulatory region 422580	1875 bp proximal