rs30805701 SNP Detail

Summary

• ID
  rs30805701
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79785366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CTCCTCCAGC ACCTTCTTCT
  K
  CCCTTCTCGT CCTGCTTCCT TGCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45469204	mCV23428659	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		G
ss47034940	NES10769008	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	G	G	T		T	G	G	G		T	G	G	T		T
ss135376880	ENSMUSSNP5804231	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							G
ss320812410	CHEV_3_79681981	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30805701					SNP	T	T	T	G	G	G	T	T	T	G	G	G	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034940	NES10769008	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79785366 () rs orientation: forward

Symbol	Name	Function Class
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	281 bp proximal
Rr578600	regulatory region 578600	764 bp proximal
Rr578601	regulatory region 578601	1150 bp proximal
Tssr29594	transcription start site region 29594	776 bp downstream
Tssr29595	transcription start site region 29595	753 bp downstream