rs30806279 SNP Detail

Summary

• ID
  rs30806279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:81671880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGAGACT AAGGTACTGA ATAAGATTTT
  CTGAAGAAAA GTTAGCAAAT TTTCTCAAAA GCTTACAACT CTGATATTGA TCCATTAATA
  AGTCAATCAC TAGGAAATAG CACAATAACA ATCGGCTCAC ATAAAAGGTT TTAACTCTGA
  Y
  TCTGGTGCAC AGTATAAATT TGCTTTCAGA CTAAAGCCCA GCACATGCAT ACACATATGC
  TAATTATGAT AGCAAATAAG ATGTGAACTT TCTCTGAATT TTCCCTGATC AATATGGAAC
  ACTGAATCTC TAAGACTATG TCATTTGAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44966157	mCV22950457	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss49426968	NES12829008	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	C		C	T	T	T		C	T	T	C		C
ss144820421	ENSMUSSNP939782	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss319815910	CHEV_1_81690740	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30806279					SNP	C	C	C	T	T	C	C	T	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49426968	NES12829008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:81671880 () rs orientation: forward

Symbol	Name	Function Class
Gm70553	predicted gene, 70553	within coordinates
Rr413999	regulatory region 413999	1994 bp proximal