rs30806291 SNP Detail

Summary

• ID
  rs30806291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127201839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCATTCC ATCTCTGTTC
  TTGTGCTCCA AAAAGGCCAC ACCTAAGATG CTGGAGAGCT GAGGCTCATG CCTGAGGCAC
  GAGTGCAGCT CTGCACTCCT GTCATCCATA AAACAGGAAA CAAAACAACA GTGCTTAGAA
  ATCTTCACTT CTCCCTCTGC TGCACCTTAG TTGGGCTTTG GAAGCAGAAA AGAGAATCCG
  Y
  TTGCTGGGAA ACAGAGTGAG AACTCCATCA TTTTTCCTCT GCTGTCTGTG TTCTGCCAGC
  TGACGGTACC TAGTGCAAAA TTTAACCATT AAAGGGGGGC AATCTCCTAG CAACCCCACT
  GTTGGGCAAA ACTAATCAAG TGTCCACACT ACGGCTTCAC CCTGCCTCTC CTCTTATCAC
  CTACTCCCCC AGAACAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45467203	mCV23997511	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss135862629	ENSMUSSNP6506968	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320953853	CHEV_3_127111108	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30806291					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127201839 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	497 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	892 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	767 bp proximal
Tssr35571	transcription start site region 35571	690 bp downstream
Tssr35572	transcription start site region 35572	747 bp downstream
Tssr35573	transcription start site region 35573	796 bp downstream
Tssr35574	transcription start site region 35574	824 bp downstream
Tssr35575	transcription start site region 35575	854 bp downstream