rs30807778 SNP Detail

Summary

• ID
  rs30807778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATGACC TGTTGTCTGC
  TTCTGCAAGG ATTAGCTGAA AAACACCAGT CCACAGTGTG AAAATGAGTG ATGTCCCGTG
  ACACATGGGT GACTGGGCAG TCAGGGCAGT GGATGTGATG CTAAGTCACT ACTGAAGGCA
  GAGGAAGTCC AGATTCACAG AAATGGAGAC TTATGCTCAG TGATCAAAAA AGATTCAGGG
  Y
  GGGTAAATTT GATCTTAAAT TCTGTTTCAG ACAATTAAAT ATCTGCAGTG AGGAGATGCA
  AGAATGGCTT AGTGATTAAG AGCATGCTCT GGGGCTAGTG AGATGGTTCA GCAGGTAAGA
  GCACTGACTT CTCTTCTGGA GGTCCTGAGT TCAAATCCCA GCAACCACAT AATGAGATCT
  GGTGCCCTCT TCTGGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45469489	mCV24027906	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136101768	ENSMUSSNP5342465	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321028595	CHEV_3_151952272	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30807778					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994945 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Tssr32405	transcription start site region 32405	1018 bp upstream