rs30807862 SNP Detail

Summary

• ID
  rs30807862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125998590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcagaaggc tgggggagat gaatgctggg
  ggctcagctt attttctttg tattcagtcc aggaaccACG Gtgtggtgat ctgaatgggg
  atggtttcca taaacttatg tgtttgaagg cttgggtcca gtgagtaaaa ctgcttgaaa
  R
  ggattaggag gtgtgaactt gtcagagaag gtatatcact ggggtgggct ttgaggtttt
  aaaaacctat gcgtgggcca ttgttctctc tggcttcgga tcaggctcta aaagctatta
  cctcagtgcc aatactgttt tctaccatga                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44966257	mCV22278534	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss145423584	ENSMUSSNP5708937	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss319959159	CHEV_1_127967430	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30807862					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125998590 () rs orientation: forward

Symbol	Name	Function Class
Gm35562	predicted gene, 35562	within coordinates
Gm37936	predicted gene, 37936	within coordinates
Nckap5	NCK-associated protein 5	within coordinates