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rs30808103 SNP Detail
Summary
  • ID
    rs30808103
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr1:172525035 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CTTCTTAGAC TCTGAACAAA AGAAGCAAAT GCTGACTATC
    CTGCCTCCTC CCTGAAGCTT CCACATTATA AAAAAGAAAC AAAAAAACAA AAAAACCCCC
    S
    AAAAACCCCC AAAACCCAAA ACCCCCAAAC CAAAAAAAAC CCAAAACATC AAACAAACAA
    AACCCAGTCT GTTACACAAG ATTGTGACCA ATGGTACAT                       
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss44966531 mCV24592122 ABI CRAMUS_MOUSE f SNP C C C G
ss146199161 ENSMUSSNP1977947 ENSEMBL ENSEMBL_Sanger f SNP C G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs30808103 SNP C C C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:172525035 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Crp C-reactive protein, pentraxin-related 588 bp upstream
D1Mit149 DNA segment, Chr 1, Massachusetts Institute of Technology 149 1761 bp proximal
D1Mit149.1 DNA segment, Chr 1, Massachusetts Institute of Technology 149.1 1609 bp proximal
Rr423653 regulatory region 423653 58 bp proximal
Rr423654 regulatory region 423654 426 bp proximal
Tssr10246 transcription start site region 10246 578 bp upstream
Tssr10247 transcription start site region 10247 1521 bp upstream
Tssr10248 transcription start site region 10248 1587 bp upstream
Tssr10249 transcription start site region 10249 1611 bp upstream
Tssr10250 transcription start site region 10250 1666 bp upstream
Tssr10251 transcription start site region 10251 1722 bp upstream
Tssr10252 transcription start site region 10252 1788 bp upstream
Tssr10253 transcription start site region 10253 1837 bp upstream
Tssr10254 transcription start site region 10254 1902 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory