rs30808625 SNP Detail

Summary

• ID
  rs30808625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81934336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT GCAATTACAA TCATGAGGCC
  R
  TGAAACTGTA GTCATTCTAA GAACG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45967417	mCV22779848	ABI	CRAMUS_MOUSE	f	SNP		G			A	A
ss51348109	NES13741135	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		A	G	A		A	G	G	A
ss133338075	ENSMUSSNP7191141	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				A
ss321840577	CHEV_6_81907349	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30808625					SNP	G	G	G	G	A	A	G	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348109	NES13741135	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81934336 () rs orientation: forward

Symbol	Name	Function Class
Gcfc2	GC-rich sequence DNA binding factor 2	within coordinates
Mrpl19	mitochondrial ribosomal protein L19	496 bp downstream
Rr632566	regulatory region 632566	749 bp distal