rs30809062 SNP Detail

Summary

• ID
  rs30809062
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4878407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGGAGCCGG CGGGGCGCCG CCTGCCTGCC TAGCACTCTC
  ACCCCCACCC CTGAAGCAAA TTCCGAGGTC CAGTGCTGAA ACAGCCGACC TGCAGCGGGA
  S
  TGTCTGTCCT GCCGCAGGAG CTCAGATTAA CTTTTGCTCC CGGAAACTTT TGTGATGAAA
  AAAATTCGAC TTTCGTGACT TGACTTTAGA GACAGCTGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44966439	mCV23845286	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss148476949	ENSMUSSNP5025773	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30809062					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4878407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	within coordinates
Gm37988	predicted gene, 37988	within coordinates
Gm70766	predicted gene, 70766	454 bp upstream
Lypla1	lysophospholipase 1	within coordinates
Rr407434	regulatory region 407434	465 bp distal
Rr407435	regulatory region 407435	263 bp distal
Rr407436	regulatory region 407436	68 bp distal
Tssr5801	transcription start site region 5801	512 bp downstream
Tssr5802	transcription start site region 5802	256 bp downstream
Tssr5803	transcription start site region 5803	62 bp upstream
Tssr10888	transcription start site region 10888	482 bp upstream
Tssr10889	transcription start site region 10889	437 bp upstream